Publications of the Team Aquatic Virus

Below you can find the full listing of publications produced by the Team (and by Ian in previous years…). Ian’s Google Scholar Page can be found at: https://scholar.google.com/citations?user=pSyvJVMAAAAJ&hl=en&oi=ao.

*Publication of the Hewson Lab, Cornell including undergraduate and graduate students

*67. Fuess LE, Eisenlord ME, Closek CJ, Tracy AM, Mauntz R, Gignoux-Wolfson S, Mortisch MM, Yoshioka R, Burge CA, Harvell CD, Friedman CS, Hewson I, Herschberger PK, Roberts, SB (2015) Up in Arms: Immune and Nervous System Response to Sea Star Wasting Disease” PLoS One DOI: 10.1371/journal.pone.0133053

*66. Longo AV, Savage AE, Hewson I, Zamudio KR (2015) Seasonal and ontogenetic variation of skin microbial communities and relationships to natural disease dynamics in declining amphibians” Proceedings of the Royal Society B DOI: 10.1098/rsos.140377

*65. Fahsbender E, Hewson I, Rosario K, Tuttle AD, Varsani A, Breitbart M (2015) Discovery of a novel circular DNA virus in the Forbes sea star, Asterias forbesiArchives of Virology 160: 2349-2351

*64. Lee DY, Owens MS, Doherty M, Eggleston EM, Hewson I, Crump BC, Cornwell JC (2015) The Effects of Oxygen Transition on Community Respiration and Potential Chemoautotrophic Production in a Seasonally Stratified Anoxic EstuaryEstuaries and Coasts 38: 104-117

*63. Eggleston EM, Lee DY, Owens MS, Cornwell JC, Crump BC, Hewson I (2015) “Key respiratory genes elucidate bacterial community respiration in a seasonally anoxic estuary ISME Journal 17: 2306-2318

*62. Gudenkauf BM, Hewson I (2014) Metatranscriptomic Analysis of Pycnopodia helianthoides (Asteroidea) Affected by Sea Star Wasting Disease PLoS One 10: e0128150-e0128150

*61. Hewson I, Button JB, Gudenkauf BM, Miner B, Newton AL, Gaydos JK, Wynne J, Groves CL, Hendler GA, Murray M, Fradkin S, Breitbart M, Fahsbender E, Lafferty KD, Kilpatrick AM, Miner CM, Raimondi P, Lahner L, Friedman CS, Daniels S, Haulena M, Marliave J, Burge CA, Eisenlord ME, Harvell CD (2014) Densovirus associated with sea-star wasting disease and mass mortalityProceedings of the National Academy of Sciences USA 111:17278-17283

*60. Chamberlain SD, Kaplan KA, Modanu M, Sirianni KM, Annandale S, Hewson I (2014) Biogeography of planktonic and benthic cyanobacteria in coastal waters of the Big Island, Hawai’I FEMS Microbiology Ecology 89: 80-88

*59. Hanson BT, Hewson I, Madsen EL (2014) Metaproteomic survey of six aquatic habitats: Discovering the identities of microbial populations active in biogeochemical cycling Microbial Ecology 67: 520-539

*58. Gudenkauf BM, Eaglesham JB, Aragundi WM, Hewson I (2014) Discovery of urchin-associated densoviruses (Parvoviridae) in coastal waters of the Big Island, Hawaii Journal of General Virology 95: 652-658

*57. Hewson I, Eggleston EM, Doherty M, Lee DY, Owens M, Shapleigh JP, Cornwell JC, Crump BC (2014) Metatranscriptomic analyses of plankton communities inhabiting surface and sub-pycnocline waters of the Chesapeake Bay during oxic-anoxic-oxic transitionsApplied and Environmental Microbiology 80: 328-338

*56. Shilova I, Thompson A, Hewson I, Zehr J (2013) “Metagenomics of Ocean Gyres”. In: Nelson K (ed) Encyclopedia of Metagenomics. SpringerReference (www.springerreference.com). Springer-Verlag, Berlin Heidelberg. DOI: 10.1007/SpringerReference_303294

*55. Eaglesham JB, Hewson I (2013) Widespread detection of eukaryotic circular ssDNA viral genotypes in estuarine, coastal and open ocean net plankton” Marine Ecology Progress Series 494: 55-64

*54. Hewson I, Ng G, Li W, LaBarre BA, Aguirre I, Barbosa JG, Breitbart M, Greco AW, Kearns CM, Looi A, Schaffner LR, Thompson PD, Hairston NG (2013) Metagenomic identification, seasonal dynamics and potential transmission mechanisms of a Daphnia-associated putative RNA-DNA hybrid virus in two temperate lakesLimnology and Oceanography 58: 1605-1620

*53. Brown JM, LaBarre BA, Hewson I (2013) Characterization of Trichodesmium-associated viral communities in the eastern Gulf of Mexico FEMS Microbiology Ecology 84: 603-613

*52. Hewson I, Eaglesham JB, Hook TO, LaBarre BA, Sepulveda MS, Thompson PD, Watkins JM, Rudstam LG (2013) Investigation of viruses associated with Diporeia spp. from the Laurentian Great Lakes and Owasco Lake, NY as a potential stressor of declining populations Journal of Great Lakes Research 39: 499-506

*51. Dunlap DS, Ng TFF, Rosario K, Barbosa JG, Greco AM, Breitbart M, Hewson I (2013) Molecular and microscopic evidence of viruses in marine copepods Proceedings of the National Academy of Sciences USA 110:1375-1380

*50. Hewson I, Barbosa JG, Brown JM, Donelan RP, Eaglesham J, Eggleston EM, LaBarre BA (2012) Temporal dynamics and decay of putatively allochthonous and autochthonous viral genotypes in contrasting freshwater lakes Applied and Environmental Microbiology 78: 6582 – 6591

*49. Simonis JL, Neuharth-Keusch D, Hewson I (2012) Aquatic bacterial assemblage variability in the supra littoral zone of Appledore Island, Gulf of Maine” FEMS Microbiology Ecology 80: 501-508

*48. Brown JM, Felice NR, Scalfone, NB, Hewson I (2012) Influence of habitat confluence on aquatic microbial assemblages in experimental mesocosms Aquatic Microbial Ecology 66: 33-40

*47. Hewson I, Brown JM, Burge CA, Couch CS, LaBarre BA, Mouchka ME, Naito M, Harvell CD (2012) Viral assemblages associated with healthy and aspergillosis-afffected tissues of the Gorgonia ventalina holobiontCoral Reefs 31:487–491

*46. Wilhelm MB, Hewson I (2012) Characterization of thrombolitic bioherm cyanobacterial communities in a meromictic marl lake (Fayetteville Green Lake) Geomicrobiology Journal 29: 727-732

45. Moisander PH, Zhang R, Boyle EA, Hewson I, Montoya JP, Zehr JP (2011) Analogous nutrient limitations in unicellular diazotrophs and Prochlorococcus in the South Pacific OceanThe ISME Journal 6: 733-744

44. Tripp HJ, Hewson I, Boyarsky S, Stuart J, Zehr JP (2011) Misannotations of rRNA can now generate 90% false positive protein matches in metatranscriptomic studies Nucleic Acids Research doi: 10.1093/nar/gkr576

43. Steele JA, Countway PD, Xia L, Vigil PD, Beman JM, Kim DY, Chow CT, Sachdeva R, Jones AC, Schwalbach MS, Rose JM, Hewson I, Patel A, Sun F, Caron DA, Fuhrman JA (2011) Marine bacteria, archaeal and protistan association networks reveal ecological linkages The ISME Journal doi:10.1038/ismej.2011.24

*42. Hewson I, Gitlin SA, Brown JM, Doud DF (2011) “Nucleopolyhedrovirus detection and distribution in terrestrial, freshwater, and marine habitats of Appledore Island Microbial Ecology 62(1):48-57

*41. Douglas H. Bartlett , Daniel Vaulot , Josefa Antón, Jack Gilbert, Ian Hewson, Georgios Kotoulas, Karen Nelson, Victoria Orphan, Nathan Price (2010) ” Connecting Genotypes with Function” pp31-48 in: Marine Genomics: Next Generation Sequencing: Report of the EU-US Task Force on Biotechnology Research, Washington DC

*40. Mouchka ME, Hewson I, Harvell DC (2010) Coral-associated bacterial assemblages: Current knowledge and the potential for climate-driven impacts Integrative and Comparative Biology. doi:10.1093/icb/icq061.

*39. Hewson I, Chow CE, Fuhrman JA (2010) The ecological role of aquatic viruses Encyclopedia of Life Sciences. DOI: 10.1002/9780470015902.a0022546

38. Goebel NL, Turk KA , Achilles KA, Hewson I, Morrison AE, Paerl RW, Montoya JP, Edwards CA, Zehr JA (2010) Distribution of major groups of diazotrophic cyanobacteria and their potential contribution to N2 fixation in the equatorial Atlantic Ocean. Environmental Microbiology 12: 3272-3289

*37. Brown JM, Hewson I (2010) Ecophysiology of a common unannotated gene transcript in surface water microbial assemblages of the oligotrophic open ocean. Aquatic Microbial Ecology 60: 289-297

36. Hewson, I., Poretsky, R.S., Tripp, H.J., Montoya, J.P., Zehr, J.P. (2010). Spatial patterns and light-driven variation of microbial population gene expression in surface waters of the oligotrophic open oceanEnvironmental Microbiology 12: 1940 – 1956

35. Moisander PH, Hewson I , Beinart RA, White AE, Johnson KS, Carlson CA, Montoya JP, Zehr JP (2009) Unicellular Cyanobacterial Distributions Broaden the Oceanic N2 Fixation Domain. Science 327: 1512-1514

34. Hewson, I., Paerl, R.W., Tripp, H.J., Zehr, J.P., Karl, D.M. (2009) Metagenomic potential of microbial assemblages in the surface waters of the central Pacific Ocean tracks variability in oceanic habitat Limnology and Oceanography 54: 1981-1994

33. Hewson, I., Poretsky, R.S., White, A.E., Montoya, J.P., Zehr, J.P. (2009) Microbial community gene expression within colonies of the diazotroph, Trichodesmium, from the southwest Pacific Ocean” ISME Journal 3: 1286 – 1300

32. Hewson, I., Poretsky, R.S., Beinart, R.A., White, A.E., Shi, T., Bench, S.R., Moisander, P.H., Paerl, R.W., Tripp, H.J., Montoya, J.P., Moran, M.A., Zehr, J.P. (2009) In situ transcriptomic analysis of the globally important keystone N2-fixing taxon Crocosphaera watsoniiISME Journal 3: 618-631

31. Poretsky, R.S., Hewson, I., Sun, S., Allen, A., Moran, M.A., Zehr, J.A. (2009) Comparative day/night metatranscriptomic analysis of microbial communities in the North Pacific subtropical gyre” Environmental Microbiology 11: 1358 – 1375

30. Zehr, J.P., Hewson I., Moisander, P.H. (2008) “Molecular biology techniques and applications for ocean sensing” Ocean Science 5: 101 – 113

29. Zehr, J.P., Bench, S.R., Carter, B.J., Hewson, I., Niazi, F., Shi, T., Tripp, H.J., Affourtit, J.P. (2008) “Globally distributed uncultivated oceanic N2-Fixing cyanobacteria lack oxygenic photosystem II” Science 322:1110-1112

28. Hewson, I., Fuhrman, J.A. (2008) “Bacteria, Viruses and the Microbial Loop” in Capone, D.G., Carpenter E.J., Mulholland M.M., Bronk, D.A. “Nitrogen in the Marine Environment” 2.ed Kluwer Academic

27. Fuhrman, J.A., Steele, J.A., Hewson, I., Schwalbach, M.S., Brown, M.V., Green, J.L., Brown, J.H. (2008) “A latitudinal diversity gradient in planktonic marine bacteria” Proceedings of the National Academy of Sciences USA 105: 7774-7778

26. Hewson, I., Moisander, P.H., Morrison, A.E., Zehr, J.A. (2007) “Diazotrophic bacterioplankton in a coral reef lagoon: Phylogeny, diel nitrogenase expression, and response to phosphate enrichment” The ISME Journal 1: 78-91

25. Hewson, I., Fuhrman, J.A. (2007) “Covariation between viral parameters with bacterial assemblage richness and diversity in the water column and sediments” Deep Sea Research 54: 811-830

24. Patel, A., Noble, R.A., Steele, J.A., Schwalbach, M.S., Hewson, I., Fuhrman, J.A. (2007)“Virus and prokaryote enumeration from planktonic marine environments by epifluorescence microscopy with SYBR Green I” Nature Protocols 2: 269-276

23. Hewson, I., Moisander, P.H., Achilles, K.M. Carlson, C.A., Jenkins, B.D., Mondragon, E.A., Morrison, A.E. and Zehr, J.P. (2007) “Characteristics of diazotrophs in surface to abyssopelagic waters of the Sargasso Sea” Aquatic Microbial Ecology 46: 15-30

22. Zehr, J.P., Montoya, J.P., Jenkins, B.D., Hewson, I., Mondragon, E.A., Short, C.M., Church, M.J., Hansen, A., Karl, D.M (2007) “Experiments linking nitrogenase gene expression to N2 fixation in the North Pacific subtropical gyre” Limnology and Oceanography 52: 169-183

21. Hewson, I., Jacobson/Meyer, M.E., Fuhrman, J.A. (2007) “Diversity and biogeography of bacterial assemblages in surface sediments across the San Pedro Basin, Southern California Borderlands Environmental Microbiology 9: 923-933

20. Hewson, I., Fuhrman, J.A. (2007) “Characterization of lysogens in bacterioplankton assemblages of the Southern California Borderland” Microbial Ecology 53: 631-638

19. Fuhrman, J.A., Hewson, I., Schwalbach, M.S., Steele, J.A., Brown, M.V., Naeem, S. (2006) “Annually reoccurring bacterial communities are predictable from ocean conditions” Proceedings of the National Academy of Sciences. 103: 13104 -13109

18. Hewson, I., Winget, D.M., Williamson, K.E., Fuhrman J.A., Wommack, K.E. (2006) “Viral and bacterial assemblage covariance in oligotrophic waters of the West Florida Shelf (Gulf of Mexico)” Journal of the Marine Biological Association of the UK 86:577-589

17. Hewson, I., Fuhrman, J.A. (2006) “Viral impacts upon marine bacterioplankton assemblage structure” Journal of the Marine Biological Association of the UK 86: 577-589

16. Hewson, I., Capone, D.G., Steele, J.A., Fuhrman, J.A. (2006) “Influence of Amazon and Orinoco offshore surface water plumes on oligotrophic bacterioplankton diversity in the West Tropical Atlantic” Aquatic Microbial Ecology 43: 11-22

15. Hewson, I., Steele, J.A., Capone, D.G., Fuhrman J.A. (2006) “Remarkable heterogeneity in meso- and bathypelagic bacterioplankton assemblage structure” Limnology and Oceanography 51: 1274-1283

14. Hewson, I., Steele, J.A., Capone, D.G., Fuhrman J.A. (2006) “Temporal and spatial scales of oligotrophic surface water bacterioplankton assemblage variation” Marine Ecology Progress Series 311: 67-77

13. Hewson, I., Fuhrman, J.A. (2006) “Improved strategy for comparing microbial assemblage fingerprints” Microbial Ecology 51: 147-153

12. Hewson, I., Fuhrman, J.A. (2006) “Spatial and vertical biogeography of sediment bacteria on a coral reef flat” Marine Ecology Progress Series 306: 79 – 86

11. Brown, M.V., Schwalbach, M.S., Hewson, I., Fuhrman, J.A. (2005) “Coupling 16S-ITS rDNA clone libraries and automated ribosomal intergenic spacer analysis to show marine microbial diversity: development and application to a time series” Environmental Microbiology 7: 1466-1479

10. Hewson, I., Fuhrman, J.A. (2004) “Richness and diversity of bacterioplankton species along an estuarine gradient in Moreton Bay, Australia” Applied and Environmental Microbiology 70: 3425-3433

9. Hewson, I., Govil, S.R., Capone, D.G., Carpenter, E.J., Fuhrman, J.A. (2004) “Evidence of Trichodesmium viral lysis and potential significance for biogeochemical cycling in the oligotrophic ocean” Aquatic Microbial Ecology 36: 1- 8

8. Schwalbach, M.S., Hewson, I., Fuhrman, J.A. (2004) “Viral effects on bacterial community composition in seawater microcosms” Aquatic Microbial Ecology 34: 117-127

7. Breitbart, M., Hewson, I., Felts, B., Mahaffey, J.M., Nulton, J., Salamon, P., Rohwer, F. (2003). “Metagenomic analyses of an uncultured viral community from human feces” Journal of Bacteriology 185: 6220-6223

6. Hewson, I., Fuhrman, J.A. (2003). “Viriobenthos production and virioplankton sorptive scavenging by suspended particles in coastal and pelagic waters” Microbial Ecology 46: 337-347

5. Hewson, I., Vargo, G.A., Fuhrman, J.A. (2003) “Bacterial diversity in shallow oligotrophic marine benthos and overlying waters: effects of viral infection, containment and nutrient enrichment” Microbial Ecology 46: 322-336

4. Hewson, I., J. M. O’Neil, Abal, E.G. (2001). “A low-latitude bloom of the surf-zone diatom, Anaulus australis (Centrales; Bacillariophyta) on the coast of Southern Queensland (Australia).” Journal of Plankton Research 23: 1233-1236

3. Hewson, I., J. M. O’Neil, Dennison, W.C. (2001). “Virus-like particles associated with Lyngbya mjauscula (Cyanophyta; Oscillatoriaceae) bloom decline in Moreton Bay, Australia.” Aquatic Microbial Ecology 25: 207-213

2. Hewson, I., J. M. O’Neil, Fuhrman, J.A., Dennison, W.C. (2001). “Dynamics of benthic and pelagic marine viruses along eutrophication gradients in two subtropical estuaries.” Limnology and Oceanography 46: 1734-1746

1.Hewson, I., J. M. O’Neil, Heil, C.A., Bratbak, G., Dennison, W.C. (2001). “Effects of elevated virus abundance on benthic microbial communities in subtropical sediments.” Aquatic Microbial Ecology 25: 1-10.

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